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Browse Dept. of Biochemistry by Contributor "van der Donk, Wilfred A."
Now showing items 1-20 of 20
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(2009)Lantibiotics are bacterial-derived polycyclic antimicrobial peptides. They are genetically encoded and ribosomally synthesized as precursor peptides containing a structural region that undergoes post-translational modification ...
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PDF (3MB)
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(2010-05-14)Aminoacyl-tRNA synthetases (aaRSs) are ancient enzymes that charge tRNA with its cognate amino acid. In order to maintain fidelity during protein synthesis, editing mechanisms ensure that tRNAs are accurately charged. ...
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PDF (7MB)
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(2018-10-31)Lipids play crucial roles in maintaining cellular structure and energy storage. Structural lipids in the form of phospholipids constitute almost 10% of the dry cell weight in bacteria with their synthesis requiring 32 moles ...
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PDF (4MB)
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(2020-01-15)Bacterial LanC proteins have been extensively studied and shown to be responsible for installing thioether crosslinks in precursors of lanthipeptides. These modifications allow lanthipeptides to possess different biological ...
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PDF (30MB)
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(2015-01-21)All nucleated cells display a sampling of their protein contents in the form of short 9-10 amino acid peptides bound to a product of the major histocompatibility complex (MHC) on the cell surface. This class of MHC-restricted ...
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PDF (34MB)
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(2015-04-21)Staphylococcus aureus and group A Streptococcus express a family of exotoxins including staphylococcal enterotoxins A, B, C (SEA, SEB, SEC), toxic shock syndrome toxin-1 (TSST-1) and streptococcal pyrogenic exotoxins (SpeA, ...
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PDF (16MB)
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(2014-01-16)The ribosome translates genomic information into structural and catalytic protein molecules. In addition to its role in protein synthesis, the ribosome also produces small non-catalytic peptides that exert antimicrobial ...
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PDF (10MB)
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From yeast to animals: A small molecule restores iron mobilization, absorption and hemoglobinization (2019-03-15)In the classic paradigm of pharmacology, small molecules bind to and modulate dysfunctional or overactive proteins. However, in cases where a protein is missing, this strategy is no longer viable. Disorders of iron metabolism ...
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PDF (89MB)
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(2015-01-21)In the current post-genomic world, the exponential amassing of protein sequences is overwhelming the scientific community’s ability to experimentally assign each protein’s function. The use of automated, homology-based ...
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(2011-01-14)The focus of this research is the role of conformational flexibility in catalysis by a TIM-barrel enzyme in pyrimidine biosynthesis, orotidine 5’-monophosphate decarboxylase (OMPDC). OMPDC catalyzes the decarboxylation ...
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(2019-04-08)Described herein is my thesis work towards structural and biochemical characterization of bacterial proteins involved in metabolite regulation and natural product biosynthesis. In the first case, I will describe the ...
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PDF (33MB)
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(2008)Developing a selective labeling method for peptides/proteins is of great interest in numerous research areas. In order to explore this idea, a strategy was developed through which an N-terminal ketone was introduced by ...
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PDF (2MB)
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(2015-11-17)Lanthipeptides are natural products that belong to the family of ribosomally synthesized and posttranslationally modified peptides (RiPPs). They contain the characteristic lanthionine (Lan) or methyllanthionine (MeLan) ...
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PDF (8MB)
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(2009)Lantibiotics are ribosomally synthesized antimicrobial peptides containing unique thioether crosslinks, lanthionines and methyllanthionines. These motifs are introduced posttranslationally in a two-step process, which ...
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(2015-01-21)Genomic era begins with development of sequencing methods. Genome sequencing is now cost-effective and fast, giving rise to increasing amounts of genomic data. However, the function of 1% of the deposited sequences have ...
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(2010-08-31)Metalloproteins play important roles in biological systems since metal-binding sites are found in ~ 1/3 of structurally characterized proteins and in ~ 1/2 of all proteins. Despite progress, the role of these metal-binding ...
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PDF (11MB)
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(2011-01-21)Nonribosomal peptides are an important class of natural products including the life-saving antibiotics penicillin and vancomycin and the deadly microcystins and cereulide. This important category of natural products is ...
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PDF (4MB)
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(2012-02-01)Although general anti-proliferative agents that induce death in all rapidly dividing cell types remain the backbone of many chemotherapeutic regimens, recent advances have suggested that “personalized” anticancer strategies ...
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PDF (35MB)
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(2013-05-28)Natural products are chemical compounds that are synthesized by living organisms and have biological and pharmacological functions. Many natural products or their derivatives have been successfully developed as pharmaceuticals ...
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PDF (6MB)
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(2012-05-22)LanC-like protein 1 (LanCL1) is a eukaryotic homolog of bacterial protein LanC. Unlike the well studied LanC proteins, the functions of LanC-like proteins are yet unknown. To investigate the function of LanCL1 several ...
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PDF (1MB)
Now showing items 1-20 of 20