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application/pdf  140528Fig3_edit.pdf (250kB) | Figure from manuscript | |
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application/vnd.openxmlformats-officedocument.wordprocessingml.document  140224aobSupplementary.docx (446kB) | Supplemental figures and text from manuscript | Microsoft Word 2007 |
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text/plain  DatasetS1_GoldenGate_discarded.txt (43kB) | GoldenGate markers excluded from the study | Text file |
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text/plain DatasetS1_GoldenGate_retained.txt (96kB) | GoldenGate markers used in the study | Text file |
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text/plain DatasetS1_UNEAK_paralogs.txt (241kB) | RAD-seq markers excluded from the study | Text file |
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text/plain DatasetS1_UNEAK_retained.txt (5MB) | RAD-seq markers used in the study | Text file |
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text/plain DatasetS1_clusters.txt (375kB) | Results listed by individual | Text file |
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text/plain DatasetS1_metadata.txt (2kB) | Description of Dataset S1 contents | Text file |
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text/plain hapMap2genlight.R (2kB) | R function for data import | Text file |
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text/plain hapMap2genind.R (870bytes) | R function for data import | Text file |
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text/plain floatingpie_mod.R (7kB) | R function for pie chart graphics | Text file |
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text/plain plastidanalysis140220.R (23kB) | R script for analysis of plastid data | Text file |
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text/plain 130529tree.R (8kB) | R script for tree plotting | Text file |
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text/plain 130524tree_tassel_721ind.txt (45kB) | Neighbor-joining tree of individuals, Newick format | Text file |
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text/plain CoreSet130611.R (11kB) | R functions and script for choosing core germplasm sets | Text file |
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text/csv  130429DAPC_AsiaMsi_latlong.csv (164kB) | Latitude and longitude data for plots | CSV file |
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text/csv 130429_latlong_620.csv (16kB) | Latitude and longitude data for plots | CSV file |
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text/plain 130426DAPC.R (32kB) | R script for SNP analysis | Text file |
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text/plain 130327DAPC.R (4kB) | R script for SNP analysis | Text file |
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text/plain 130319DAPC.R (4kB) | R script for SNP analysis | Text file |
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text/plain 130318analysis.R (6kB) | R script for SNP analysis | Text file |
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text/plain lettered_haplotypes.txt (2kB) | Allele data for common plastid haplotypes | Text file |
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text/plain 130421chloroplast2.txt (46kB) | Plastid allele data for all individuals | Text file |
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text/csv 130318_goldengate_data.csv (1MB) | GoldenGate SNP data | CSV file |
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text/plain HapMap2.hmp.txt (34MB) | RAD-seq SNP data | Text file |
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application/octet-stream  tagPair.tps (54MB) | binary tag pair file for calling RAD-seq SNPs | Unknown |
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text/plain HapMap.hmp.txt (37MB) | RAD-seq SNP data | Text file |
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text/plain HapMap.hmc.txt (80MB) | Read counts for RAD-seq SNP data | Text file |
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text/plain HapMap.fas.txt (4MB) | Fasta file of RAD-tags | Text file |
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text/plain README.txt (8kB) | Descriptions of files | Text file |
Description
| Title: | A footprint of past climate change on the diversity and population structure of Miscanthus sinensis |
| Author(s): | Clark, Lindsay V.; Brummer, Joe E.; Głowacka, Katarzyna; Hall, Megan C.; Heo, Kweon; Peng, Junhua; Yamada, Toshihiko; Yoo, Ji Hye; Yu, Chang Yeon; Zhao, Hua; Long, Stephen P.; Sacks, Erik J. |
| Subject(s): | Andropogoneae
bioenergy biogeography plastid microsatellite climate change Miscanthus sinensis population genetics Saccharinae single nucleotide polymorphism (SNP) RAD-seq |
| Abstract: | Datasets and R scripts from: Clark LV, Brummer JE, Głowacka K, Hall MC, Heo K, Peng J, Yamada T, Yoo JH, Yu CY, Zhao H, Long SP, and Sacks EJ (2014) "A footprint of past climate change on the diversity and population structure of Miscanthus sinensis." Annals of Botany. |
| Issue Date: | 2014 |
| Citation Info: | Clark LV, Brummer JE, Głowacka K, Hall MC, Heo K, Peng J, Yamada T, Yoo JH, Yu CY, Zhao H, Long SP, and Sacks EJ (2014) "A footprint of past climate change on the diversity and population structure of Miscanthus sinensis." Annals of Botany. DOI: 10.1093/aob/mcu084 |
| Genre: | Data |
| Type: | Text dataset / spreadsheet image |
| Language: | English |
| URI: | http://hdl.handle.net/2142/49963 |
| Sponsor: | Office of Science (BER), US Department of Energy [Project ID 0017582] |
| Rights Information: | Copyright 2014, the authors. This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License. |
| Date Available in IDEALS: | 2014-06-30 |