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Title:Binning Code for Mirarab et. al.
Author(s):Mirarab, Siavash; Bayzid, Md Shamsuzzoha; Boussau, Bastien; Warnow, Tandy
Subject(s):Bioinformatics
Statistical binning
Multi-species coalescent
Incomplete lineage sorting
Species trees
Gene trees
Phylogenomics
Avian phylogenetics
Issue Date:2014
Type:Dataset / Spreadsheet
Description:This is the pipeline used for performing the binning step, and the exact code that we used in the Science paper for binning is available here. For the latest version of this code, you can refer to the github repository at https://github.com/smirarab/binning. Once the file from the IDEALS page here is unzipped, look at the README file for usage and installation guidelines. Note that this pipeline works on *nix-like systems (including MAC) but not on Windows. However, the main code to perform vertex coloring and to perform compatibility checks are in java and can run on Windows if gluing scripts are developed. Please see the README file for more information and refer to the README on the github for a more detailed explanation.
URI:http://hdl.handle.net/2142/55411
DOI:10.13012/C52Z13FT
Sponsor:SM was supported by a graduate fellowship from HHMI; MSB was supported by a graduate fellowship from the Fulbright Foundation, by the U.S. National Science Foundation under grant DBI-10735191 to iPLANT, and by the University of Alberta, made possible through a donation from Musea Ventures, which is held by Professor G. K.-S. Wong; TW was supported by the U.S. National Science Foundation under grant DBI-1062335; and BB was supported by a postdoctoral fellowship from the Human Frontier Science Program, the CNRS, and Agence Nationale de la Recherche (ANR) through Grant ANR-10-BINF-01-01 Ancestrome
Date Available in IDEALS:2014-10-20
2014-12-11


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